GitLab

I've saved in /aloy/home/mduran/myscripts/mosaic/netutils/preparation two folders, namely fetch_data and run_hotnet.

• fetch_data: this mainly comes from Tere's scripts and, as is now, it is quite involved. Please let's do it together. In brief, here we have a mixture of "downloads" and some processing that generates a file called interactions.tsv for each of the downloaded networks.
• run_hotnet: this is much easier, we just have to run, for each of the interactions.tsv files, the script prepare_networks.py, which uses [the first part of] hotnet. Hence, we need to have the executable of hotnet somewhere, too.

After this is done, we can do the raws, not before.