Pidgin v3 wrapper
As agreed, let's do a wrapper of pidgin that we can use easily in the prop_calculator.py script.
I would like to run it with the orthologue mapping. Details can be found: https://pidginv3.readthedocs.io/en/latest/install.html#id2
I suggest that we share the work here:
- @mbertoni does the wrapper (util)
- @mduran writes explores the necessary parameters and writes the corresponding method in the PropCalculator class.
Run snippets are available here:
https://pidginv3.readthedocs.io/en/latest/usage/started.html#generating-binary-predictions
These can be used to test the wrapper.