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Update similarity and connectivity authored by Miquel Duran-Frigola's avatar Miquel Duran-Frigola
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similarity-and-connectivity.md
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...@@ -93,6 +93,7 @@ Vocabularies are specified below. Terms in these vocabularies should look like: ...@@ -93,6 +93,7 @@ Vocabularies are specified below. Terms in these vocabularies should look like:
|ChEBI|CHEBI:52206| |ChEBI|CHEBI:52206|
|Reactome|R-HSA-6804756| |Reactome|R-HSA-6804756|
|Gene Ontology|GO:0023051| |Gene Ontology|GO:0023051|
|Interactome & Uniprot AC|string_Q9H3N8 inbiomap_Q9H3N8...|
|Gene Names/Symbols|HRH4| |Gene Names/Symbols|HRH4|
|NCI60 cell lines|MDA-MB-435| |NCI60 cell lines|MDA-MB-435|
|Yeast mutants|YBL067C_sn1167| |Yeast mutants|YBL067C_sn1167|
...@@ -193,7 +194,8 @@ Accordingly, some input files are specified below: ...@@ -193,7 +194,8 @@ Accordingly, some input files are specified below:
#### `C5.001` Interactome #### `C5.001` Interactome
* Key-Protein pairs (exact nodes) (2/1; default = 1): `proteins` [Default] / vocabulary: UniprotAC * Key-Protein pairs (exact nodes) (2/1; default = 1): `proteins` [Default] / vocabulary: UniprotAC
* Key-Protein pairs (neighbors) (10-1; default = 5): `protein_neighbors` / vocabulary: UniprotAC * Key-Protein pairs (neighbors) (20-1; default = 10): `protein_neighbors` / vocabulary: UniprotAC
* Key-Protein pairs (neighbors in specific network) (20-1; default = 10): `protein_neighbors_network` / vocabulary: Interactome & UniProtAC
### `D` Cells ### `D` Cells
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