| ... | @@ -62,7 +62,7 @@ In addition, please be aware of the Bioteque project maintained by the SB&NB. |
... | @@ -62,7 +62,7 @@ In addition, please be aware of the Bioteque project maintained by the SB&NB. |
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* [X] Next-Generation L1000 Connectivity Map [[paper](https://www.cell.com/cell/abstract/S0092-8674(17)31309-0) [data](https://clue.io/data)]. Transcriptomics perturbational data.
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* [X] Next-Generation L1000 Connectivity Map [[paper](https://www.cell.com/cell/abstract/S0092-8674(17)31309-0) [data](https://clue.io/data)]. Transcriptomics perturbational data.
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* [X] NCI-60 [[paper](https://academic.oup.com/jnci/article/108/5/djv388/2412594) [data](https://dtp.cancer.gov/databases_tools/bulk_data.htm)]. Cell-line growth-inhibition data.
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* [X] NCI-60 [[paper](https://academic.oup.com/jnci/article/108/5/djv388/2412594) [data](https://dtp.cancer.gov/databases_tools/bulk_data.htm)]. Cell-line growth-inhibition data.
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* [ ] DepMap [[data](https://depmap.org/portal/download/)]. Genetic screens in cancer.
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* [ ] DepMap [[data](https://depmap.org/portal/download/)]. Genetic screens in cancer.
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* [ ] Non-antibiotic drugs on microbiome [[paper](https://www.nature.com/articles/nature25979) [data](https://figshare.com/articles/Extensive_impact_of_non-antibiotic_drugs_on_human_gut_bacteria/4813882)]
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* [ ] Non-antibiotic drugs on microbiome [[paper](https://www.nature.com/articles/nature25979) [data](https://figshare.com/articles/Extensive_impact_of_non-antibiotic_drugs_on_human_gut_bacteria/4813882)]. Over a thousand drugs screened against bacterial commensals. Only a few hundreds are active.
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* [ ] Consensus LINCS L1000 signatures from ThinkLab [[data](https://figshare.com/articles/Consensus_signatures_for_LINCS_L1000_perturbations/)]. Aggregated signatures.
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* [ ] Consensus LINCS L1000 signatures from ThinkLab [[data](https://figshare.com/articles/Consensus_signatures_for_LINCS_L1000_perturbations/)]. Aggregated signatures.
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* [ ] PharmacoDB [[data](https://pharmacodb.pmgenomics.ca)]: Integrative pharmacogenomics resource across CCL panels.
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* [ ] PharmacoDB [[data](https://pharmacodb.pmgenomics.ca)]: Integrative pharmacogenomics resource across CCL panels.
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* [X] DeepCodex [[data](http://deepcodex.org/) [paper](http://dx.doi.org/10.1021/acs.molpharmaceut.8b00284)]: An autoencoder of LINCS data.
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* [X] DeepCodex [[data](http://deepcodex.org/) [paper](http://dx.doi.org/10.1021/acs.molpharmaceut.8b00284)]: An autoencoder of LINCS data.
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| ... | @@ -87,4 +87,4 @@ In addition, please be aware of the Bioteque project maintained by the SB&NB. |
... | @@ -87,4 +87,4 @@ In addition, please be aware of the Bioteque project maintained by the SB&NB. |
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* [ ] Tox21 [[data]()]. A panel of 12 NR/SR pathways related to toxicity.
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* [ ] Tox21 [[data]()]. A panel of 12 NR/SR pathways related to toxicity.
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* [ ] ToxCast [[data]()]. A panel of >600 features related to toxicity.
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* [ ] ToxCast [[data]()]. A panel of >600 features related to toxicity.
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* [ ] eToxLab [[paper](https://jcheminf.biomedcentral.com/articles/10.1186/s13321-015-0058-6) [data](https://github.com/phi-grib/eTOXlab)]: A framework for predictive toxicology.
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* [ ] eToxLab [[paper](https://jcheminf.biomedcentral.com/articles/10.1186/s13321-015-0058-6) [data](https://github.com/phi-grib/eTOXlab)]: A framework for predictive toxicology.
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* [ ] ProtTox-II [[data](http://tox.charite.de/protox_II/index.php?site=links)]: Toxicity predictions of several kinds. |
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* [ ] ProtTox-II [[data](http://tox.charite.de/protox_II/index.php?site=links)]: Toxicity predictions of several kinds. It has an API that allows 250 queries a day. |
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