Small fix to a molrepo file extension and molrepo tables data

package/chemicalchecker/util/parser/parser.py

@@ -458,7 +458,7 @@ class Parser():
         converter = Converter()
 
         file_path = os.path.join(
-            map_paths["DTP_NCI60_ZSCORE"], "output/DTP_NCI60_ZSCORE.xls")
+            map_paths["DTP_NCI60_ZSCORE"], "output/DTP_NCI60_ZSCORE.xlsx")
         Parser.__log.info("Converting Zscore xls file to csv")
         data_xls = pd.read_excel(file_path, index_col=0)
         csv_path = file_path[:-4] + ".csv"

pipelines/update_resources/molrepo.csv

@@ -17,6 +17,5 @@ biur_virtual,ChemistryX Biur virtual library,f,t
 hmdb,"The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body. It is intended to be used for applications in metabolomics, clinical chemistry, biomarker discovery and general education. The database is designed to contain or link three kinds of data: 1) chemical data, 2) clinical data, and 3) molecular biology/biochemistry data.",f,t
 cmaup,CMAUP Natural Products Database. This database is a meta-resource.,f,t
 repohub,"Drug Repurposing Hub database, accessible from https://clue.io/repurposing-app, is a curated resource of approved and experimental drugs. It has the advantage of being tighthly integrated within the Broad LINCS environment.",f,t
-deepcodex,DeepCodex uses a deep-learned embedding of gene expression profiles to find chemical and genetic perturbations with similar biological effects.,f,t
 pharmacodb,PharmacoDB assembles the largest in vitro drug sensitivity screens in a single database.,f,t
-touchstone,Reference Clue.io collection,f,
+touchstone,Reference Clue.io collection,f,t

pipelines/update_resources/molrepo_has_datasource.csv

@@ -2,13 +2,12 @@ molrepo_name,datasource_name
 cmaup,cmaup
 repohub,repohub
 kegg,kegg_br
-deepcodex,deepcodex_map
 bindingdb,bindingdb
 chebi,chebi_lite
 chembl,chembl
 ctd,CTD_chemicals_diseases
 drugbank,drugbank
-lincs,GSE92742_Broad_LINCS_pert_info
+lincs,compoundinfo_beta
 morphlincs,morphlincs_LDS-1195
 mosaic,mosaic_all_collections
 nci60,DTP_NCI60_ZSCORE