Commit c58eea9a authored by Martino Bertoni's avatar Martino Bertoni 🌋
Browse files
parents c9aa1853 4a4f9005
Pipeline #2710 passed with stages
in 26 minutes and 39 seconds
......@@ -145,6 +145,8 @@ faiss.Kmeans(10, 20).train(numpy.random.rand(1000, 10).astype(numpy.float32))"'
pip install hyperopt # Hyperparameters optimization
pip install shap # SHapley Additive exPlanations for ML models
pip install signaturizer # ChemicalChecker Signaturizer
# integration of D1
pip install git+https://github.com/Maayanlab/geode.git # Python implementation of the R package GeoDE
......
......@@ -49,7 +49,6 @@ from update_resources.create_database import create_db_dataset
from chemicalchecker.core.diagnostics import Diagnosis
# this is needed to export signaturizers at the end
sys.path.insert(0, '/aloy/home/mbertoni/code/signaturizer')
from signaturizer.exporter import export_batch
......
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