Commit cf68c20b authored by mlocatelli's avatar mlocatelli 🍁
Browse files

Small fix to a molrepo file extension and molrepo tables data

parent c7ad25b6
Pipeline #2506 passed with stages
in 62 minutes and 45 seconds
...@@ -458,7 +458,7 @@ class Parser(): ...@@ -458,7 +458,7 @@ class Parser():
converter = Converter() converter = Converter()
file_path = os.path.join( file_path = os.path.join(
map_paths["DTP_NCI60_ZSCORE"], "output/DTP_NCI60_ZSCORE.xls") map_paths["DTP_NCI60_ZSCORE"], "output/DTP_NCI60_ZSCORE.xlsx")
Parser.__log.info("Converting Zscore xls file to csv") Parser.__log.info("Converting Zscore xls file to csv")
data_xls = pd.read_excel(file_path, index_col=0) data_xls = pd.read_excel(file_path, index_col=0)
csv_path = file_path[:-4] + ".csv" csv_path = file_path[:-4] + ".csv"
......
...@@ -17,6 +17,5 @@ biur_virtual,ChemistryX Biur virtual library,f,t ...@@ -17,6 +17,5 @@ biur_virtual,ChemistryX Biur virtual library,f,t
hmdb,"The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body. It is intended to be used for applications in metabolomics, clinical chemistry, biomarker discovery and general education. The database is designed to contain or link three kinds of data: 1) chemical data, 2) clinical data, and 3) molecular biology/biochemistry data.",f,t hmdb,"The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body. It is intended to be used for applications in metabolomics, clinical chemistry, biomarker discovery and general education. The database is designed to contain or link three kinds of data: 1) chemical data, 2) clinical data, and 3) molecular biology/biochemistry data.",f,t
cmaup,CMAUP Natural Products Database. This database is a meta-resource.,f,t cmaup,CMAUP Natural Products Database. This database is a meta-resource.,f,t
repohub,"Drug Repurposing Hub database, accessible from https://clue.io/repurposing-app, is a curated resource of approved and experimental drugs. It has the advantage of being tighthly integrated within the Broad LINCS environment.",f,t repohub,"Drug Repurposing Hub database, accessible from https://clue.io/repurposing-app, is a curated resource of approved and experimental drugs. It has the advantage of being tighthly integrated within the Broad LINCS environment.",f,t
deepcodex,DeepCodex uses a deep-learned embedding of gene expression profiles to find chemical and genetic perturbations with similar biological effects.,f,t
pharmacodb,PharmacoDB assembles the largest in vitro drug sensitivity screens in a single database.,f,t pharmacodb,PharmacoDB assembles the largest in vitro drug sensitivity screens in a single database.,f,t
touchstone,Reference Clue.io collection,f, touchstone,Reference Clue.io collection,f,t
...@@ -2,13 +2,12 @@ molrepo_name,datasource_name ...@@ -2,13 +2,12 @@ molrepo_name,datasource_name
cmaup,cmaup cmaup,cmaup
repohub,repohub repohub,repohub
kegg,kegg_br kegg,kegg_br
deepcodex,deepcodex_map
bindingdb,bindingdb bindingdb,bindingdb
chebi,chebi_lite chebi,chebi_lite
chembl,chembl chembl,chembl
ctd,CTD_chemicals_diseases ctd,CTD_chemicals_diseases
drugbank,drugbank drugbank,drugbank
lincs,GSE92742_Broad_LINCS_pert_info lincs,compoundinfo_beta
morphlincs,morphlincs_LDS-1195 morphlincs,morphlincs_LDS-1195
mosaic,mosaic_all_collections mosaic,mosaic_all_collections
nci60,DTP_NCI60_ZSCORE nci60,DTP_NCI60_ZSCORE
......
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