chemical_checker issueshttps://gitlabsbnb.irbbarcelona.org/packages/chemical_checker/-/issues2018-11-21T15:47:53Zhttps://gitlabsbnb.irbbarcelona.org/packages/chemical_checker/-/issues/29Update similarity_external2018-11-21T15:47:53ZMiquel Duran-Frigolamiquel.duran@irbbarcelona.orgUpdate similarity_externalDo not forget to update `similarity_external.py` script.
I think the rest is just fine.Do not forget to update `similarity_external.py` script.
I think the rest is just fine.Oriol GuitartOriol Guitart2018-11-18https://gitlabsbnb.irbbarcelona.org/packages/chemical_checker/-/issues/17Update similarity scripts2018-11-05T08:58:41ZMiquel Duran-Frigolamiquel.duran@irbbarcelona.orgUpdate similarity scriptsI have modified the `similarity` scripts so that they can compute **all-vs-all** similarities using `cdist`.
Even if we have conveyed that `faiss` will be used for the pipeline, I think it would be interesting to incorporate as part of ...I have modified the `similarity` scripts so that they can compute **all-vs-all** similarities using `cdist`.
Even if we have conveyed that `faiss` will be used for the pipeline, I think it would be interesting to incorporate as part of this repository my version of the similarity.
We can call my scripts: `all_similarities` and Oriol's `nearest_neighbors`.
My version of the scripts can be found in: `/aloy/home/mduran/myscripts/mosaic/similarity/`. They have the same structure as before.Miquel Duran-Frigolamiquel.duran@irbbarcelona.orgMiquel Duran-Frigolamiquel.duran@irbbarcelona.org